Notice Information
Notice Title
High Throughput Sequencer
Notice Description
The MRC Unit the Gambia at LSHTM intends to purchase an Illumina Novaseq 6000 sequencing system including delivery (to the Gambia), installation, validation and training. The high throughput sequencer is capable of sequencing very large genomes. Also included is Illumina Dragen Server and Licence.
Lot Information
Lot 1
High Throughput DNA Sequencer - Illumina Novaseq 6000 system and Dragen Server Software. System specifications Output range: 80-6000Gb Paired end reads per run: 1.6B - 40B Maximum read length: 2 x 250bp Run time: 13 - 44 hours Flow cell type: SP, S1, S2, S4 Reads passing filter per flow cell: Single-end reads upto 8-10B and paired-end reads 16-20B Quality scores: between 75 to greater than 90% bases higher than Q30 Instrument Specifications Instrument configuration Computer and touch screen display Installation setup and accessories Data collection and analysis software Instrument control computer Base unit: Portwell WADE-8022 with Intel i7 4700EQ CPU Memory: 2 x 8 GB DDR3L SODIMM Hard Drive: None Solid-State Drive: 256GB mSATA Operating system: Windows 10 or higher Laser Wavelengths: 532nm, 660nm, 780nm, 790nm Power requirements 200-240 VAC 50/60Hz, 16A, single phase, 2500 W Network connection Dedicated 1 Gb connection between the instrument and data management system. Bandwidth for network connection 200 Mb/s/instrument for internal network uploads 200 Mb/s/instrument for cloud base uploads 5Mb/s/instrument for instrument operational Data uploads
Procurement Information
LSHTM believes that the technical requirements of the high throughput next generation sequencing platform can only be met by one known supplier. There are no other competing systems on the market with anything approaching this capacity. The instrument performs whole genome sequencing efficiently and cost effectively. In addition to whole genome sequencing, it can be used for a variety of other applications including but not limited to methylation sequencing, population studies, De novo sequencing, gene expression profiling, metagenomics etc. The instrument has a scalable throughput for dynamic study sizes with an output range of 6TB to 20B reads in less than 2 days. It is able to sequence deeply for clear answers to research questions. The flexibility of the instrument allows users to mix and match flow cell types as well as choose between multiple read lengths, workflows and many more. The different DRAGEN pipelines are able to analyse generated data within a very short period of time thereby helping with the data analysis bottleneck and lack of bioinformaticians. The NovaSeq 6000 System combines unmatched system output with rapid run times to deliver the highest daily throughput of any NGS system currently available. ISN Products (Nig.) Ltd are the approved distributor for Illumina products in the region (Gambia).
Notice Details
Publication & Lifecycle
- Open Contracting ID
- ocds-h6vhtk-03acb2
- Publication Source
- Find A Tender Service
- Latest Notice
- https://www.find-tender.service.gov.uk/Notice/005792-2023
- Current Stage
- Award
- All Stages
- Award
Procurement Classification
- Notice Type
- Award Notice
- Procurement Type
- Standard
- Procurement Category
- Goods
- Procurement Method
- Limited
- Procurement Method Details
- Award procedure without prior publication of a call for competition
- Tender Suitability
- Not specified
- Awardee Scale
- SME
Common Procurement Vocabulary (CPV)
- CPV Divisions
33 - Medical equipments, pharmaceuticals and personal care products
38 - Laboratory, optical and precision equipments (excl. glasses)
-
- CPV Codes
33100000 - Medical equipments
38000000 - Laboratory, optical and precision equipments (excl. glasses)
Notice Value(s)
- Tender Value
- Not specified
- Lots Value
- Not specified
- Awards Value
- Not specified
- Contracts Value
- £917,617 £500K-£1M
Notice Dates
- Publication Date
- 28 Feb 20232 years ago
- Submission Deadline
- Not specified
- Future Notice Date
- Not specified
- Award Date
- 28 Feb 20232 years ago
- Contract Period
- Not specified - Not specified
- Recurrence
- Not specified
Notice Status
- Tender Status
- Complete
- Lots Status
- Not Specified
- Awards Status
- Active
- Contracts Status
- Active
Buyer & Supplier
Contracting Authority (Buyer)
- Main Buyer
- LONDON SCHOOL OF HYGIENE & TROPICAL MEDICINE
- Contact Name
- Paul Pester
- Contact Email
- paul.pester@lshtm.ac.uk
- Contact Phone
- +44 02079272471
Buyer Location
- Locality
- LONDON
- Postcode
- WC1E 7HT
- Post Town
- Central London
- Country
- England
-
- Major Region (ITL 1)
- TLI London
- Basic Region (ITL 2)
- TLI3 Inner London - West
- Small Region (ITL 3)
- TLI36 Camden
- Delivery Location
- Not specified
-
- Local Authority
- Camden
- Electoral Ward
- Bloomsbury
- Westminster Constituency
- Holborn and St Pancras
Further Information
Notice URLs
Open Contracting Data Standard (OCDS)
View full OCDS Record for this contracting process
The Open Contracting Data Standard (OCDS) is a framework designed to increase transparency and access to public procurement data in the public sector. It is widely used by governments and organisations worldwide to report on procurement processes and contracts.
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